@article(backhouse2010effect, author = "S. Backhouse and J. R. Phillips", year = "2010", title = "Effect of induced myopia on scleral myofibroblasts and in vivo ocular biomechanical compliance in the Guinea pig", journal = "Investigative Ophthalmology \& Visual Science", volume = "51", number = "12", pages = "6162--6171", doi = "10.1167/iovs.10-5387", ) @article(91, author = "J. Das and M. Ho and J. Zikherman and C. Govern and M. Yang and A. Weiss and A. K. Chakraborty and J. P. Roose", year = "2009", title = "Digital Signaling and Hysteresis Characterize Ras Activation in Lymphoid Cells", journal = "Cells", volume = "136", pages = "337--351", doi = "10.1016/j.cell.2008.11.051", ) @article(gentle2003collagen, author = "A. Gentle and Y. Liu and J. E. Martin and G. L. Conti and N. A. McBrien", year = "2003", title = "Collagen gene expression and the altered accumulation of scleral collagen during the development of high myopia", journal = "Journal of Biological Chemistry", volume = "278", number = "19", pages = "16587--16594", doi = "10.1074/jbc.M300970200", ) @book(83, author = "R. Goebel and R. G. Sanfelice and A. R. Teel", year = "2012", title = "Hybrid Dynamical Systems: Modeling, Stability, and Robustness", publisher = "Princeton University Press", ) @article(guo2005paradigmatic, author = "C. Guo and J. Jiang and J. Martin Elliott and L. Piacentini", year = "2005", title = "Paradigmatic identification of MMP-2 and MT1-MMP activation systems in cardiac fibroblasts cultured as a monolayer", journal = "Journal of cellular biochemistry", volume = "94", number = "3", pages = "446--459", doi = "10.1002/jcb.20272", ) @article(93, author = "J. Hu and D. Cui and X. Yang and S. Wang and S. Hu and C. Li and J. Zeng", year = "2008", title = "Bone morphogenetic protein-2: a potential regulator in scleral remodeling", journal = "Molecular Vision", volume = "14", pages = "2370--2380", ) @inproceedings(89, author = "J. Hu and K. R. Qin and C. Xiang and T. H. Lee", year = "2010", title = "Modeling of Hysteresis in a Mammalian Gene Regulatory Network", booktitle = "9th Annual International Conference on Computational Systems Bioinformatics", volume = "9", organization = "Life Sciences Society", pages = "50--55", ) @article(96, author = "M. D. Jacobs", year = "2009", title = "Multiscale systems integration in the eye", journal = "WIREs Systems Biology and Medicine", volume = "1", pages = "15--27", doi = "10.1002/wsbm.29", ) @article(ji2009form, author = "F. T. Ji and Q. Li and Y. L. Zhu and L. Q. Jiang and X. T. Zhou and M. Z. Pan and J. Qu", year = "2009", title = "Form Deprivation Myopia in C57BL/6 Mice", journal = "[Zhonghua yan ke za zhi] Chinese journal of ophthalmology", volume = "45", number = "11", pages = "1020", ) @article(90, author = "B. P. Kramer and M. Fussenegger", year = "2005", title = "Hysteresis in a synthetic mammalian gene network", journal = "Proceedings of the National Academy of Sciences (USA)", volume = "102", pages = "9517--9522", doi = "10.1073/pnas.0500345102", ) @article(mcbrien2013regulation, author = "N. A. McBrien", year = "2013", title = "Regulation of Scleral Metabolism in Myopia and the Role of Transforming Growth Factor-beta", journal = "Experimental eye research", doi = "10.1016/j.exer.2013.01.014", ) @article(99, author = "N. A. McBrien and A. Gentile", year = "2003", title = "Role of the sclera in the development and pathological complications of myopia", journal = "Progress in Retinal and Eye Research", volume = "22", pages = "307--338", doi = "10.1016/S1350-9462(02)00063-0", ) @article(mcbrien2000scleral, author = "N. A. McBrien and P. Lawlor and A. Gentle", year = "2000", title = "Scleral Remodeling During the Development of and Recovery from Axial Myopia in the Tree Shrew", journal = "Investigative ophthalmology \& visual science", volume = "41", number = "12", pages = "3713--3719", ) @article(82, author = "T. Mestl and E. Plahte and S. W. Omholt", year = "1995", title = "A mathematical framework for describing and analysing gene regulatory networks", journal = "Journal of Theoretical Biology", volume = "176", pages = "291--300", doi = "10.1006/jtbi.1995.0199", ) @article(monea2002plasmin, author = "S. Monea and K. Lehti and J. Keski-Oja and P. Mignatti", year = "2002", title = "Plasmin activates pro-matrix metalloproteinase-2 with a membrane-type 1 matrix metalloproteinase-dependent mechanism", journal = "Journal of cellular physiology", volume = "192", number = "2", pages = "160--170", doi = "10.1002/jcp.10126", ) @article(94, author = "E. Morgunova and A. Tuuttila and U. Bergmann and K. Tryggvason", year = "2002", title = "Structural insight into the complex formation of latent matrix metalloproteinase 2 with tissue inhibitor of metalloproteinase 2", journal = "Proceedings of the National Academy of Sciences of the USA", volume = "99", number = "11", pages = "7414--7419", doi = "10.1073/pnas.102185399", ) @article(rada1999gelatinase, author = "J. A. Rada and C. A. Perry and M. L. Slover and V. R. Achen", year = "1999", title = "Gelatinase A and TIMP-2 expression in the fibrous sclera of myopic and recovering chick eyes", journal = "Investigative ophthalmology \& visual science", volume = "40", number = "13", pages = "3091--3099", ) @article(Rada2006sclera, author = "J. A. Rada and S. Shelton and T. T. Norton", year = "2006", title = "The Sclera and Myopia", journal = "Experimental eye research", volume = "82", number = "2", pages = "185--200", doi = "10.1016/j.exer.2005.08.009", ) @article(sakalihasan1996activated, author = "N. Sakalihasan and P. Delvenne and B. V. Nusgens and R. Limet and C. M. Lapi{\`e}re", year = "1996", title = "Activated forms of {MMP2} and {MMP9} in abdominal aortic aneurysms", journal = "Journal of vascular surgery", volume = "24", number = "1", pages = "127--133", doi = "10.1016/S0741-5214(96)70153-2", ) @inproceedings(92, author = "R. G. Sanfelice and D. A. Copp and P. Nanez", year = "2013", title = "A Toolbox for Simulation of Hybrid Systems in {M}atlab/{S}imulink: {H}ybrid {E}quations ({HyEQ}) {T}oolbox", booktitle = "Proceedings of Hybrid Systems: Computation and Control Conference", pages = "101--106", doi = "10.1145/2461328.2461346", ) @article(95, author = "L. Shelton and J. S. Rada", year = "2007", title = "Effects of cyclic mechanical stretch on extracellular matrix synthesis by human sclera fibroblasts", journal = "Experimental Eye Research", volume = "84", pages = "314--322", doi = "10.1016/j.exer.2006.10.004", ) @article(98, author = "S. L. Shelton", year = "July 2009", title = "Characterization of Mechanisms Regulating Scleral Extracellular Matrix Remodeling to Promote Myopia Development", journal = "PhD thesis, University of Oklahoma Health Science Center, Oklahoma City", ) @unpublished(Shu.Sanfelice.13.I&C, author = "Q. Shu and R. G. Sanfelice", year = "2013", title = "Dynamical Properties of a Two-gene Network with Hysteresis", note = "Submitted to Special Issue on Hybrid Systems and Biology, Elsevier Information and Computation", ) @article(siegwart2005selective, author = "J. T. Siegwart and T. T. Norton", year = "2005", title = "Selective regulation of {MMP} and {TIMP} {mRNA} levels in tree shrew sclera during minus lens compensation and recovery", journal = "Investigative ophthalmology \& visual science", volume = "46", number = "10", pages = "3484--3492", doi = "10.1167/iovs.05-0194", ) @article(97, author = "J. C. H. Tan and F. B. Kalapesi and M. T. Coroneo", year = "2006", title = "Mechanosensitivity and the eye: cells coping with the pressure", journal = "British Journal of Ophthalmology", volume = "90", pages = "383--388", doi = "10.1136/bjo.2005.079905", ) @article(xiong2006effects, author = "W. Xiong and R. Knispel and J. Mactaggart and B. T. Baxter", year = "2006", title = "Effects of tissue inhibitor of metalloproteinase 2 deficiency on aneurysm formation", journal = "Journal of vascular surgery", volume = "44", number = "5", pages = "1061--1066", doi = "10.1016/j.jvs.2006.06.036", ) @article(yang2009myopia, author = "Y. Yang and X. Li and N. Yan and S. Cai and X. Liu", year = "2009", title = "Myopia: A collagen disease?", journal = "Medical hypotheses", volume = "73", number = "4", pages = "485--487", doi = "10.1016/j.mehy.2009.06.020", )