References

  1. Ferhat Ay, Fei Xu & Tamer Kahveci (2009): Scalable steady state analysis of Boolean biological regulatory networks. PloS one 4(12), pp. e7992, doi:10.1371/journal.pone.0007992.
  2. Belaïd Benhamou & Pierre Siegel (2012): A New Semantics for Logic Programs Capturing and Extending the Stable Model Semantics. Tools with Artificial Intelligence (ICTAI), pp. 25–32, doi:10.1109/ICTAI.2012.167.
  3. Maria I Davidich & Stefan Bornholdt (2008): Boolean network model predicts cell cycle sequence of fission yeast. PloS one 3(2), pp. e1672, doi:10.1371/journal.pone.0001672.
  4. Hidde De Jong (2002): Modeling and simulation of genetic regulatory systems: a literature review. Journal of computational biology 9(1), pp. 67–103, doi:10.1089/10665270252833208.
  5. Abhishek Garg, Alessandro Di Cara, Ioannis Xenarios, Luis Mendoza & Giovanni De Micheli (2008): Synchronous versus asynchronous modeling of gene regulatory networks. Bioinformatics 24(17), pp. 1917–1925, doi:10.1093/bioinformatics/btn336.
  6. Abhishek Garg, Ioannis Xenarios, Luis Mendoza & Giovanni DeMicheli (2007): An efficient method for dynamic analysis of gene regulatory networks and in silico gene perturbation experiments, pp. 62–76, doi:10.1007/978-3-540-71681-5_5.
  7. François Jacob & Jacques Monod (1961): Genetic regulatory mechanisms in the synthesis of proteins. Journal of molecular biology 3(3), pp. 318–356, doi:10.1016/S0022-2836(61)80072-7.
  8. Tarek Khaled, Belaïd Benhamou & Pierre Siegel (2018): A new method for computing stable models in logic programming. Tools with Artificial Intelligence (ICTAI), pp. 800–807, doi:10.1109/ICTAI.2018.00125.
  9. Mushthofa Mushthofa, Gustavo Torres, Yves Van de Peer, Kathleen Marchal & Martine De Cock (2014): ASP-G: an ASP-based method for finding attractors in genetic regulatory networks. Bioinformatics 30(21), pp. 3086–3092, doi:10.1093/bioinformatics/btu481.

Comments and questions to: eptcs@eptcs.org
For website issues: webmaster@eptcs.org