@book(allen2010introduction,
 author       = {Linda JS Allen},
 year         = {2010},
 title        = {An introduction to stochastic processes with applications to biology},
 publisher    = {CRC Press},
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@book(andersson2000,
 author       = {H. Andersson and T. Britton},
 year         = {2000},
 title        = {Stochastic {Epidemic} {Models} and {Their} {Statistical} {Analysis}},
 publisher    = {Springer-Verlag},
 doi          = {10.1007/978-1-4612-1158-7},
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@article(andreychenko2015,
 author       = {A. Andreychenko and L. Mikeev and C. Wolf},
 year         = {2015},
 title        = {Model Reconstruction for Moment-Based Stochastic Chemical Kinetics},
 journal      = {ACM Transactions on Modeling and Computer Simulation (TOMACS)},
 volume       = {25},
 number       = {2},
 pages        = {12},
 doi          = {10.1145/2699712},
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@article(bhattachayya1943measure,
 author       = {A Bhattacharyya},
 year         = {1943},
 title        = {On a measure of divergence between two statistical population defined by their population distributions},
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@article(bonachela2012patchiness,
 author       = {Juan A Bonachela and Mu{\~n}oz, Miguel A and Simon A Levin},
 year         = {2012},
 title        = {Patchiness and demographic noise in three ecological examples},
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 volume       = {148},
 number       = {4},
 pages        = {724--740},
 doi          = {10.1007/s10955-012-0506-x},
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@article(tutorial,
 author       = {L. Bortolussi and J. Hillston and D. Latella and M. Massink},
 year         = {2013},
 title        = {Continuous approximation of collective system behaviour: A tutorial},
 journal      = {Performance Evaluation},
 volume       = {70},
 number       = {5},
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@inproceedings(valuetools2014,
 author       = {L. Bortolussi and L. Nenzi},
 year         = {2014},
 title        = {Specifying and monitoring properties of stochastic spatio-temporal systems in signal temporal logic},
 booktitle    = {Proceedings of the 8th International Conference on Performance Evaluation Methodologies and Tools},
 pages        = {66--73},
 doi          = {10.4108/icst.Valuetools.2014.258183},
)
@inproceedings(BortolussiNGGHL15,
 author       = {Luca Bortolussi and {De Nicola}, Rocco and Vashti Galpin and Stephen Gilmore and Jane Hillston and Diego Latella and Michele Loreti and Mieke Massink},
 year         = {2015},
 title        = {{CARMA:} Collective Adaptive Resource-sharing Markovian Agents},
 booktitle    = {Proceedings Thirteenth Workshop on Quantitative Aspects of Programming Languages and Systems, {QAPL} 2015, London, UK.},
 pages        = {16--31},
 doi          = {10.4204/EPTCS.194.2},
)
@incollection(lanciani2014,
 author       = {Luca Bortolussi and Roberta Lanciani},
 year         = {2014},
 title        = {Stochastic approximation of global reachability probabilities of Markov population models},
 booktitle    = {Computer Performance Engineering},
 publisher    = {Springer},
 pages        = {224--239},
 doi          = {10.1007/978-3-319-10885-8\_16},
)
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 author       = {Richard Durrett and Simon Levin},
 year         = {1994},
 title        = {The importance of being discrete (and spatial)},
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 author       = {Rick Durrett},
 year         = {1999},
 title        = {Stochastic spatial models},
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 volume       = {41},
 number       = {4},
 pages        = {677--718},
 doi          = {10.1137/S0036144599354707},
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@article(erban2009stochastic,
 author       = {Radek Erban and S Jonathan Chapman},
 year         = {2009},
 title        = {Stochastic modelling of reaction--diffusion processes: algorithms for bimolecular reactions},
 journal      = {Physical biology},
 volume       = {6},
 number       = {4},
 pages        = {046001},
 doi          = {10.1088/1478-3975/6/4/046001},
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@inproceedings(CFeng14,
 author       = {Cheng Feng},
 year         = {2014},
 title        = {Patch-based Hybrid Modelling of Spatially Distributed Systems by Using Stochastic {HYPE} - ZebraNet as an Example},
 booktitle    = {Proceedings Twelfth International Workshop on Quantitative Aspects of Programming Languages and Systems, {QAPL} 2014, Grenoble, France.},
 pages        = {64--77},
 doi          = {10.4204/EPTCS.154.5},
)
@incollection(feng2014paloma,
 author       = {Cheng Feng and Jane Hillston},
 year         = {2014},
 title        = {PALOMA: A process algebra for located markovian agents},
 booktitle    = {Quantitative Evaluation of Systems},
 publisher    = {Springer},
 pages        = {265--280},
 doi          = {10.1007/978-3-319-10696-0\_22},
)
@article(cfeng2016tomacs,
 author       = {Cheng Feng and Jane Hillston and Vashti Galpin},
 year         = {2016},
 title        = {Automatic Moment-Closure Approximation of Spatially Distributed Collective Adaptive Systems},
 journal      = {ACM Transactions on Modeling and Computer Simulation (TOMACS)},
 volume       = {26},
 number       = {4},
 doi          = {10.1145/2883608},
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@article(fricker2014incentives,
 author       = {Christine Fricker and Nicolas Gast},
 year         = {2014},
 title        = {Incentives and redistribution in homogeneous bike-sharing systems with stations of finite capacity},
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 pages        = {1--31},
 doi          = {10.1007/s13676-014-0053-5},
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@article(gillespie1977exact,
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@incollection(guenther2013journey,
 author       = {Marcel C Guenther and Jeremy T Bradley},
 year         = {2013},
 title        = {Journey data based arrival forecasting for bicycle hire schemes},
 booktitle    = {Analytical and Stochastic Modeling Techniques and Applications},
 publisher    = {Springer},
 pages        = {214--231},
 doi          = {10.1007/978-3-642-39408-9\_16},
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@incollection(guenther2013moment,
 author       = {Marcel C Guenther and Anton Stefanek and Jeremy T Bradley},
 year         = {2013},
 title        = {Moment closures for performance models with highly non-linear rates},
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@article(hasenauer2013,
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@book(vankampen,
 author       = {N. G. van Kampen},
 year         = {2007},
 title        = {Stochastic processes in physics and chemistry},
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@book(kurtz1981,
 author       = {T. G. Kurtz},
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@incollection(moharbojan,
 author       = {Bojan Mohar},
 year         = {1997},
 title        = {Some applications of Laplace eigenvalues of graphs},
 booktitle    = {Graph Symmetry},
 series       = {NATO ASI Series},
 volume       = {497},
 publisher    = {Springer Netherlands},
 pages        = {225--275},
 doi          = {10.1007/978-94-015-8937-6\_6},
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@article(ng2002spectral,
 author       = {Andrew Y Ng and Michael I Jordan and Yair Weiss},
 year         = {2002},
 title        = {On spectral clustering: Analysis and an algorithm},
 journal      = {Advances in neural information processing systems},
 volume       = {2},
 pages        = {849--856},
 doi          = {10.1.1.19.8100},
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@article(shi2000normalized,
 author       = {Jianbo Shi and Jitendra Malik},
 year         = {2000},
 title        = {Normalized cuts and image segmentation},
 journal      = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
 volume       = {22},
 number       = {8},
 pages        = {888--905},
 doi          = {10.1109/34.868688},
)
@article(stefanek2011fluid,
 author       = {Anton Stefanek and Richard A Hayden and Jeremy T Bradley},
 year         = {2011},
 title        = {Fluid computation of the performance: energy tradeoff in large scale {Markov} models},
 journal      = {ACM SIGMETRICS Performance Evaluation Review},
 volume       = {39},
 number       = {3},
 pages        = {104--106},
 doi          = {10.1145/2160803.2160817},
)
@unpublished(mela,
 author       = {Ludovica Luisa Vissat and Jane Hillston and Glenn Marion and Matthew J Smith},
 year         = {to appear},
 title        = {{MELA}: Modelling in Ecology with Location Attributes},
 note         = {Proceedings of the fourth international symposium on Modelling and Knowledge Management applications: Systems and Domains, {MoKMaSD} 2015, York, UK},
)
@article(von2007tutorial,
 author       = {Von Luxburg, Ulrike},
 year         = {2007},
 title        = {A tutorial on spectral clustering},
 journal      = {Statistics and computing},
 volume       = {17},
 number       = {4},
 pages        = {395--416},
 doi          = {10.1007/s11222-007-9033-z},
)